PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0614880.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 171aa    MW: 19664.9 Da    PI: 10.2458
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0614880.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003692114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ F     L  H+r+H
  Lj5g3v0614880.1  92 HECSICGQEFALGQALGGHMRRH 114
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.564264IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-94266IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-742114No hitNo description
PROSITE profilePS501579.8474269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SMARTSM003550.1292114IPR015880Zinc finger, C2H2-like
PfamPF139125.4E-992115IPR007087Zinc finger, C2H2
PROSITE profilePS501579.68192114IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MKRQRDEQGF QNIDLANCLM LLSHPIETTK CKPQKRFSPV EFECITCNRK FSSFQALGGH  60
RASHKKLKRD REEFKSDVKT DLRLGNKYSK MHECSICGQE FALGQALGGH MRRHRVSTNE  120
GLFSQVVMKV PVLKRSNSFR VMCLDLNLTP LQNDLKLLFG NMAPKMDSFV I
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0614880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362992.12e-74zinc finger protein ZAT1-like
SwissprotQ9SLD44e-44ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A396H5129e-73A0A396H512_MEDTR; Putative transcription factor C2H2 family
STRINGAES817401e-73(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-46C2H2 family protein