PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0616270.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YB
Protein Properties Length: 119aa    MW: 13310.1 Da    PI: 4.7786
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0616270.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.55.9e-5622114294
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      reqdrflP+an+srimkk lPan+ki+kdaketvqecvsefisfvtseasdkcqrekrktingddllwa+atlGfe+y++plk+yl+ yre+e
  Lj5g3v0616270.1  22 REQDRFLPVANISRIMKKGLPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEEYIDPLKLYLAAYREIE 114
                      89*****************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.0E-5118114IPR009072Histone-fold
SuperFamilySSF471136.52E-3824113IPR009072Histone-fold
PfamPF008089.0E-282791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.0E-205573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.0E-207492No hitNo description
PRINTSPR006153.0E-2093111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MADAPASPPD ESGDHSPRSS FREQDRFLPV ANISRIMKKG LPANGKIAKD AKETVQECVS  60
EFISFVTSEA SDKCQREKRK TINGDDLLWA MATLGFEEYI DPLKLYLAAY REIEVILNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-4820112193NF-YB
4awl_B4e-4820112294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-4820112294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.224950.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0616270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027934383.14e-73nuclear transcription factor Y subunit B-1-like isoform X1
RefseqXP_027934384.14e-73nuclear transcription factor Y subunit B-1-like isoform X1
SwissprotQ8VYK43e-62NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A371HPE03e-70A0A371HPE0_MUCPR; Nuclear transcription factor Y subunit B-8 (Fragment)
STRINGGLYMA03G33490.12e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-64nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]