PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v0659440.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TCP

Protein Properties

Length: 202aa MW: 21297.3 Da PI: 9.8049

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v0659440.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.9	4.6e-35	45	131	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+ +++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i++ tgt++ +a ++++ sss+ ++s + Lj5g3v0659440.1 45 ATTTRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAVTGTGTVPAAPISTVAPSSSTPAPSVS 131 67899***********************************************************55555333333333333333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-29	50	144	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.568	51	105	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MTSDLVIHPF PHPTTTTVAT AGTTTITTGT ASNSKAKLAV TRKPATTTRS TKDRHTKVNG 60 RGRRVRMPPL CAARIFQLTR ELGHRSDGET IEWLLRHAEP SIIAVTGTGT VPAAPISTVA 120 PSSSTPAPSV SCPVQAVSEV SAAGMGMGMF SVQPSCRLDL CQPAGMDYPA VSGYRNMPFT 180 ALLLQPATAA EENQQEQALS KQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v0659440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027363101.1	2e-80	transcription factor TCP11
Swissprot	Q9SJK7	3e-43	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A1S2Y0X3	1e-76	A0A1S2Y0X3_CICAR; transcription factor TCP11
STRING	XP_004497526.1	2e-77	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-42	TCP family protein