PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0866920.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HB-other
Protein Properties Length: 72aa    MW: 8292.44 Da    PI: 9.9477
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0866920.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.13e-081372653
                     S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRa 53
                     +ft++++ e+e+  ++  n  p ++  + LA+k            ++ +qV +WFqN+R+
  Lj5g3v0866920.1 13 RFTQNEVAEMEAILQEhnNAMPARDVLAVLAEKFsespdrkgkiTVQMKQVWNWFQNKRY 72
                     69*************766999*********************99999************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-11372IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-81071IPR009057Homeodomain-like
PROSITE profilePS500719.4261372IPR001356Homeobox domain
PfamPF000461.1E-51372IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQNEVA EMEAILQEHN NAMPARDVLA VLAEKFSESP DRKGKITVQM  60
KQVWNWFQNK RY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.30711e-120cell culture| floral bud| root
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v0866920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1343341e-117BT134334.1 Lotus japonicus clone JCVI-FLLj-21B7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028755542.13e-43protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2
SwissprotQ8RWJ73e-34SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLI3S1I74e-46I3S1I7_LOTJA; Uncharacterized protein
STRINGAET030104e-41(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2094844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.21e-36sequence-specific DNA binding transcription factors;sequence-specific DNA binding