PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v0889470.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 166aa MW: 18100.3 Da PI: 9.1577

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v0889470.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9e-05	101	123	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H ++ H Lj5g3v0889470.1 101 QCPQCGAKFSSVTTLVEHVQKvH 123 7******************9988 PP
2	zf-C2H2	18.7	4.6e-06	138	160	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L+ H + H Lj5g3v0889470.1 138 VCPKCSKGFRDPVSLVEHVERdH 160 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1110.10	5.8E-4	3	37	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.0029	100	123	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.64	100	128	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.1E-5	101	156	No hit	No description
Pfam	PF13894	1.7E-4	101	123	No hit	No description
PROSITE pattern	PS00028	0	102	123	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.037	137	165	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.5	137	160	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	139	160	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MLDHCLKHRF GPDHKCPGPK KLETSFPFLS LLNKNRKEER KPNSSSTPSS SKWSSSFLNA 60 ASNIRASAEA GMSKLSGEIN QVWQTTKDGV GQNSGSEHVE QCPQCGAKFS SVTTLVEHVQ 120 KVHERSGNQS GVRVAIDVCP KCSKGFRDPV SLVEHVERDH GGSSRA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.17255	0.0	floral bud\| root

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v0889470.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027366855.1	2e-93	zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 isoform X1
Swissprot	Q0D5B9	2e-49	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A371IFR9	3e-86	A0A371IFR9_MUCPR; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 (Fragment)
STRING	GLYMA02G31550.2	5e-83	(Glycine max)
STRING	XP_010102532.1	5e-83	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5864	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	3e-46	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]