PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1048210.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 178aa    MW: 20380.4 Da    PI: 5.7831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1048210.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000192850123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C++ F++   L  H++ H
  Lj5g3v1048210.1 28 YECVFCKRGFTTAQALGGHMNIH 50
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-62654No hitNo description
Gene3DG3DSA:3.30.160.603.8E-42654IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.992855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDFSYQEDSK SSSEELDRND GVGTGRSYEC VFCKRGFTTA QALGGHMNIH RKDRANNKNK  60
ATTFPPPSSS KNIEGDHNYL GFYSAINYPS HHNYFPATIP DREVDALINY HQLYFPSHAC  120
GTRPNEVLGV ENRHLLFGQD WRTKGLSMYT NNPLCVHEDK DKMENNSEED ELDLELRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1048210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027367903.14e-70zinc finger protein 10-like
TrEMBLK7LZ958e-68K7LZ95_SOYBN; Uncharacterized protein
STRINGGLYMA13G18161.11e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-13C2H2 family protein