PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1093960.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 266aa    MW: 30604.8 Da    PI: 7.4181
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1093960.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.66.1e-50101381129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF P+deelv +yL kk++++++   +++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+ gyWkatgkd++vl+
  Lj5g3v1093960.1  10 LPPGFRFYPNDEELVLHYLYKKIKNEQVLK-DTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGYRTNRATTCGYWKATGKDRTVLD 102
                      79*************************666.88***************88888999************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++e+vg++ktLvfy++rap+g k+ W+mhe+rle
  Lj5g3v1093960.1 103 PiTREVVGMRKTLVFYRNRAPNGIKSGWIMHEFRLE 138
                      999999***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-598156IPR003441NAC domain
PROSITE profilePS5100557.04610156IPR003441NAC domain
PfamPF023658.2E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGLRDLGASL PPGFRFYPND EELVLHYLYK KIKNEQVLKD TLVEIDLHTC EPWQLPEVAK  60
LNANEWYFFS FRDRKYATGY RTNRATTCGY WKATGKDRTV LDPITREVVG MRKTLVFYRN  120
RAPNGIKSGW IMHEFRLETP HSPPKEDWVL CRVFHKGKSD INSANKLSPQ LMFEATPPSS  180
PPTNYQITMP VIGCNNQLAP FPSSMATTTT TQNYNNSFLN LLQFSLETNT NCSSITQIST  240
PKCDDDGYGF LWDMDLEENS FKMVLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-46915916168NO APICAL MERISTEM PROTEIN
1ut4_B1e-46915916168NO APICAL MERISTEM PROTEIN
1ut7_A1e-46915916168NO APICAL MERISTEM PROTEIN
1ut7_B1e-46915916168NO APICAL MERISTEM PROTEIN
3swm_A2e-46915919171NAC domain-containing protein 19
3swm_B2e-46915919171NAC domain-containing protein 19
3swm_C2e-46915919171NAC domain-containing protein 19
3swm_D2e-46915919171NAC domain-containing protein 19
3swp_A2e-46915919171NAC domain-containing protein 19
3swp_B2e-46915919171NAC domain-containing protein 19
3swp_C2e-46915919171NAC domain-containing protein 19
3swp_D2e-46915919171NAC domain-containing protein 19
4dul_A1e-46915916168NAC domain-containing protein 19
4dul_B1e-46915916168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1093960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028196831.11e-148protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE62e-60NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A445HF131e-147A0A445HF13_GLYSO; NAC domain-containing protein 21/22
STRINGGLYMA13G18620.21e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-91NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]