PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1177040.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20688.3 Da    PI: 5.4423
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1177040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.85.2e-221357549
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +   rqvtfskRr g++KKA+ELS+LC+ eva+++fs+ +k y +
  Lj5g3v1177040.1 13 DPNTRQVTFSKRRSGLFKKAHELSILCGSEVAIVVFSPGNKPYSF 57
                     6678**********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.604161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-27171IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-34160IPR002100Transcription factor, MADS-box
CDDcd002651.54E-31275No hitNo description
PRINTSPR004042.6E-20323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-251257IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRRKIEIAL VKDPNTRQVT FSKRRSGLFK KAHELSILCG SEVAIVVFSP GNKPYSFGHP  60
SVDAVAAKFL DEESNPNDDS QDGSTSDDDS STEVVVDVEE RNLQLADVMA QIHKEEKKAK  120
ELDETLKQLQ EGQELDDLYV EARGMVRKRL DEFEVADSMI LLSQKPVEGI TATKQVARKR  180
RRKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-19178177MEF2 CHIMERA
6byy_B3e-19178177MEF2 CHIMERA
6byy_C3e-19178177MEF2 CHIMERA
6byy_D3e-19178177MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177181RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1177040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020221917.11e-66agamous-like MADS-box protein AGL29
TrEMBLA0A151T3P03e-65A0A151T3P0_CAJCA; Agamous-like MADS-box protein AGL61
STRINGGLYMA05G35820.18e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-32AGAMOUS-like 29