PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1236780.1
Common NameDof-M153
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 286aa    MW: 31450.1 Da    PI: 8.1464
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1236780.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.8e-3940100262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      ke+a++cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk++s
  Lj5g3v1236780.1  40 KEEAVNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKHRS 100
                      7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-293498IPR003851Zinc finger, Dof-type
PfamPF027012.4E-334298IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.4354498IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104682IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDTAQWPQEI VMKPIEGIVV TNTCPKPESM LEIKKARPQK EEAVNCPRCH SINTKFCYYN  60
NYSLTQPRYF CKTCRRYWTE GGSLRNIPVG GGSRKNKHRS NSVISTPSTT SNKNLPDLVT  120
PTCTPNPKIF NDGQDLNLGF PKISELVHQN NNTSFCSTTT SSTSHLSALG LLTGITSSSS  180
SSRGLQYSFM PVPVSADPNT VYTTCGFPMH DFKPTLNFTL DGNGSDYASF QGHVQDTSTG  240
RVLFPFEDLK QVSSTTARMD HNNDKEVQQG DSAGYWSGML GGGGSW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.13690.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}.
UniprotTISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1236780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786440.0AB378644.1 Lotus japonicus Dof-M153 mRNA for transcription factor C2C2-Dof, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027365662.11e-123dof zinc finger protein DOF4.6 isoform X1
SwissprotQ8LAP82e-57DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLB3IX440.0B3IX44_LOTJA; Transcription factor C2C2-Dof
STRINGEOY239461e-110(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.16e-51Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asamizu E,Shimoda Y,Kouchi H,Tabata S,Sato S
    A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus.
    Plant Physiol., 2008. 147(4): p. 2030-40
    [PMID:18567832]