PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1276100.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 402aa    MW: 44184.9 Da    PI: 8.5101
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1276100.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-111945127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C+++ rtG C++G++C+F+H+p
  Lj5g3v1276100.1 19 PGEPDCSYYIRTGLCRFGATCRFNHPP 45
                     5789*********************97 PP
2zf-CCCH391.4e-126690327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     +++C+++++tGtCk+G++CkF+H++
  Lj5g3v1276100.1 66 QPECQYYLKTGTCKFGATCKFHHPR 90
                     799********************96 PP
3zf-CCCH38.51.9e-12112136327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  Lj5g3v1276100.1 112 ESECTYYLRTGQCKFGNTCKFNHPQ 136
                      679********************97 PP
4zf-CCCH382.7e-12263289127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+f+++tG Ck+G+ C+F+H++
  Lj5g3v1276100.1 263 PGQPECQFYMKTGDCKFGAVCRFHHPR 289
                      5789*********************96 PP
5zf-CCCH38.22.3e-12309335127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f++r+G+Ck+G++CkF H++
  Lj5g3v1276100.1 309 PGEPLCVFYSRYGICKFGPSCKFDHPM 335
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5871846IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-51845IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-82045IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-52346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-42444IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1596391IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-66390IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-106690IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-66792IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-56991IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14109137IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-5109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6110137IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10112136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-5115135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511262290IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6262289IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-9264289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5266291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4268290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821308336IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7308335IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9310335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5311335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4313333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MMKLRSSEAM ESGPYPQRPG EPDCSYYIRT GLCRFGATCR FNHPPNRKLV IATARMMGEF  60
PERIGQPECQ YYLKTGTCKF GATCKFHHPR DQAGIAGRVA LNILGYPLRP NESECTYYLR  120
TGQCKFGNTC KFNHPQPSNM MLSLRGSPVY SAVHSPTTLG QQSYTGGITN WPRASYVHSP  180
RWQGPSSYTP LILPQGMVSV PGWSYSGHMG SISTSDSPQQ SMGNDQGELE NAGSHGAYSQ  240
FRAGTIPVGY YALQRESIFP ERPGQPECQF YMKTGDCKFG AVCRFHHPRD RQIPAPDCIL  300
SPLGLPLRPG EPLCVFYSRY GICKFGPSCK FDHPMGVFTY NISAPPSADA PGRRLLGSSS  360
GTAALNLSSG GLVESSSAKP RRLSVSEARQ IPSDDDDIDD DR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1276100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1468020.0BT146802.1 Lotus japonicus clone JCVI-FLLj-23L7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221924.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A445F8L40.0A0A445F8L4_GLYSO; Zinc finger CCCH domain-containing protein ZFN-like isoform A
STRINGGLYMA20G36140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-161zinc finger protein 1