PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1351980.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 136aa    MW: 15078.2 Da    PI: 5.2261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1351980.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000364381955
                     HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                      +++L +llP+ +   p++ +   +   +A++YIksL+
  Lj5g3v1351980.1  4 LYSKLNSLLPNyN---PKEAVPLPDQIDEAINYIKSLE 38
                     589********66...9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-6255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-6259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MKILYSKLNS LLPNYNPKEA VPLPDQIDEA INYIKSLEEK MKMAQEKKES LGGSNKRSRG  60
SCSSSISATA VSKSPQLEVH ETGSSLEVVL TCGLDNQFIF YEIIRILQEE NIDVRSANSS  120
MAGDSMLHVV HAEVYI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1351980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540915.13e-67transcription factor bHLH162
RefseqXP_028192200.13e-67transcription factor bHLH162-like
TrEMBLA0A445HNR99e-67A0A445HNR9_GLYSO; Transcription factor bHLH162 isoform B
STRINGGLYMA12G12880.11e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-19bHLH family protein