PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1412990.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 212aa    MW: 23255.1 Da    PI: 10.5663
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1412990.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.41.2e-16556354
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54
                     + kr rr+ +NRe+ArrsR+RK+a +  Le+ v +L++eN++L k+ +  ++
  Lj5g3v1412990.1  5 DAKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLKGENSSLLKRFSDVSQ 56
                     689****************************************999877666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-19367IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.3E-14458No hitNo description
PROSITE profilePS5021711.381559IPR004827Basic-leucine zipper domain
PfamPF001703.0E-15654IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.21E-12756No hitNo description
PROSITE patternPS0003601025IPR004827Basic-leucine zipper domain
PfamPF124981.5E-4474201IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDPSDAKRVR RMLSNRESAR RSRRRKQAHL TDLETQVSQL KGENSSLLKR FSDVSQKFND  60
SAVDNRVLKA DVETLRAKVK MAEETVKRIT GLNPMFHAMS EISSMGMPPF AGSPSDNSVD  120
AAVPVQDNSH HQQFYRPVSN NPMPRHDLRV NNGLGDISSI ENVQQQNGAA VAGGNKMGQA  180
AAPLQRVASL EHLQKRIRGG VDSCGAPSNG EQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11926RRSRRRKQ
22126SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.2791e-155cell culture| floral bud| pod| root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1412990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098100.0AP009810.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT29J15, TM0280b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495799.11e-112light-inducible protein CPRF2-like isoform X1
RefseqXP_004495800.11e-113light-inducible protein CPRF2-like isoform X2
SwissprotQ990905e-81CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A1S2XWX91e-111A0A1S2XWX9_CICAR; light-inducible protein CPRF2-like isoform X1
TrEMBLA0A1S2XY941e-111A0A1S2XY94_CICAR; light-inducible protein CPRF2-like isoform X2
STRINGXP_004495799.11e-112(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.11e-45bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]