PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1428970.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 238aa    MW: 26093.4 Da    PI: 9.4435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1428970.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08194238452
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++
  Lj5g3v1428970.1 194 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQ 238
                      8**************************....899*************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-12188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.95E-7188238No hitNo description
Gene3DG3DSA:4.10.280.101.9E-12190238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.939190238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-6194238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLHCLNTPGS LAGNCSDMTV LERQRIKLPQ GNGFNCVFPS SSSSDSGSSL AEVVAQAHSI  60
KFHMPPAGPE PSPASGPDLN SAISRTFSCP PTLVEAKANE FFSIKKESYK KRKSDKPHNP  120
KIVAENDSKD KRIKVDSEDG ESNITGKISI KDNKTATKSK NRGTCANSSN SKENEDQKLD  180
YIHVRARRGQ ATDSHSLAER VRREKISERM KYLQDLVPGC NKITGKAGML DEIINYVQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.3491e-48root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1428970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045460.0AP004546.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT43N05, TM0178, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356050.16e-86transcription factor bHLH63-like
TrEMBLC0JP131e-159C0JP13_LOTJA; Putative basic helix-loop-helix protein BHLH7
STRINGGLYMA06G01430.12e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.13e-40bHLH family protein