PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1516750.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 148aa    MW: 16270.3 Da    PI: 9.5473
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1516750.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.4e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE++ l ++v+++G g Wk I +        + R+  ++k++w+++
  Lj5g3v1516750.1  5 KQKWTAEEEDALHRGVQKYGAGKWKNILKDPEfapslTSRSNIDLKDKWRNL 56
                     79************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.117162IPR017930Myb domain
SuperFamilySSF466891.73E-16258IPR009057Homeodomain-like
SMARTSM007173.8E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-15556IPR009057Homeodomain-like
PfamPF002496.4E-9556IPR001005SANT/Myb domain
CDDcd116601.08E-21657No hitNo description
PROSITE profilePS5150411.617115148IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.3E-4117146IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGNQKQKWTA EEEDALHRGV QKYGAGKWKN ILKDPEFAPS LTSRSNIDLK DKWRNLNVGT  60
GQGSNVKSRT LKPKLPAPCA VTTPDPTVQD VAPVQNATPK IPSQNSSEKD HDVKVPPRYN  120
GMIFEALSTI QDANGSDMNA IASFIEVR
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1516750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1438610.0BT143861.1 Lotus japonicus clone JCVI-FLLj-9H22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019448237.13e-58PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4I7L19e-42TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLI3STR31e-100I3STR3_LOTJA; Uncharacterized protein
STRINGXP_004486855.11e-53(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-44MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]