PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1531170.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 137aa    MW: 15870.8 Da    PI: 8.4859
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1531170.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-096184326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++lC +f  tG+C+yGd+C+++H+
  Lj5g3v1531170.1 61 QPLCFHFVNTGFCRYGDSCNYIHP 84
                     689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062203.8E-10439IPR013085Zinc finger, U1-C type
SuperFamilySSF576672.68E-15458No hitNo description
SuperFamilySSF902291.57E-75685IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0985986IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-55985IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-76083IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-76184IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MPQRKFYCDY CDKLFQDTPG DRKRHARGIQ HQQAKARWYD SIKQQEFQQQ QQRLLPPHHQ  60
QPLCFHFVNT GFCRYGDSCN YIHPNANNMQ QQPAIISTQG NVVRDSMGMG VSWGNLPPSL  120
QPPPEGGYPP LPFVDWG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1531170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0920282e-36BT092028.1 Soybean clone JCVI-FLGm-9K20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236361.23e-57putative U1 zinc finger protein
RefseqXP_028182862.13e-57zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ0JP112e-42C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A2K3KEB09e-57A0A2K3KEB0_TRIPR; Zinc finger CCCH domain-containing protein 3-like
STRINGGLYMA10G28540.11e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.19e-17C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]