PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1602450.1
Common NameLjERF19
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 317aa    MW: 35880.6 Da    PI: 6.0147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1602450.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-1974122355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Lj5g3v1602450.1  74 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 122
                      9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.77573130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3273131IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2273131IPR016177DNA-binding domain
SMARTSM003802.7E-3973136IPR001471AP2/ERF domain
PfamPF008476.6E-1274122IPR001471AP2/ERF domain
CDDcd000186.30E-3374131No hitNo description
PRINTSPR003678.4E-127485IPR001471AP2/ERF domain
PRINTSPR003678.4E-1296112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MCGGAIIADF IPRRGGRRLP ASELWPNSFG KQNDSQIEKP PIAHQQQQQQ PSTFKRSQPH  60
IAEKPMKRQR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDREARKI  120
RGKKAKVNFP NEDDDGYSVQ TRRFNPPVPL RPNIPPLFQQ QYRHDQNHNH KNLNFEFGYD  180
LNQTGSFPPH VGGISTDSVL VSVDENSGSG SGLGSGTGSE GDGYSPMEFM GSEQIGNGYF  240
GGGLKEKEKE KETEQKTEVV EEAEAAAKNE VQELSDELMA YENYMKFYQI PYYDGQSVAE  300
NNSVQESEVG DLWSFDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-21741391581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.21510.0cell culture| pod| protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1602450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786380.0AB378638.1 Lotus japonicus LjERF19 mRNA for transcription factor AP2-EREBP, complete cds.
GenBankKJ0047280.0KJ004728.1 Lotus corniculatus cultivar Leo AP2/ERF (ERF054) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241423.11e-144uncharacterized protein LOC100819416
RefseqXP_028193163.11e-144ethylene-responsive transcription factor ERF073-like
TrEMBLA0A096ZG760.0A0A096ZG76_LOTCO; AP2/ERF
TrEMBLB3IX380.0B3IX38_LOTJA; Transcription factor AP2-EREBP
STRINGGLYMA02G01960.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.18e-33ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Asamizu E,Shimoda Y,Kouchi H,Tabata S,Sato S
    A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus.
    Plant Physiol., 2008. 147(4): p. 2030-40
    [PMID:18567832]