PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v1654150.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NF-YB

Protein Properties

Length: 175aa MW: 19447.6 Da PI: 5.3814

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1654150.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	169.9	3e-53	27	121	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqdr+ Pianv+rimk++lP+nakisk+aket+qecvsef+sfvt+easdkc++ekrkt+ngdd++wal+tlGf+dy++plk yl+kyrel+g Lj5g3v1654150.1 27 REQDRLRPIANVGRIMKQILPSNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWALGTLGFDDYADPLKRYLNKYRELDG 120 89*****************************************************************************************998 PP NF-YB 96 e 96 Lj5g3v1654150.1 121 G 121 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.4E-50	24	136	IPR009072	Histone-fold
SuperFamily	SSF47113	2.58E-38	29	135	IPR009072	Histone-fold
Pfam	PF00808	3.9E-26	34	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.5E-19	60	78	No hit	No description
PRINTS	PR00615	4.5E-19	79	97	No hit	No description
PRINTS	PR00615	4.5E-19	98	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MGEREAAFNI NYNFSDNTAE EDGIIIREQD RLRPIANVGR IMKQILPSNA KISKEAKETM 60 QECVSEFVSF VTGEASDKCH KEKRKTVNGD DVCWALGTLG FDDYADPLKR YLNKYRELDG 120 GRANQNKGNN SGDENNIEGY HNCEGKPPPA PGSSSNPVAM LKLNDRSSVP QSRGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-43	26	117	1	92	Transcription factor HapC (Eurofung)
4g92_B	3e-43	26	117	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1654150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT137358	0.0	BT137358.1 Lotus japonicus clone JCVI-FLLj-13H4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028775933.1	4e-70	nuclear transcription factor Y subunit B-1-like
Swissprot	O82248	1e-57	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	I3SA61	1e-125	I3SA61_LOTJA; Uncharacterized protein
STRING	GLYMA02G17310.1	4e-69	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	5e-60	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]