PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1697360.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 462aa    MW: 51503.2 Da    PI: 7.0258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1697360.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18371421255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp+     +r++lg+f+t+ +Aaka++ a+ +++g
  Lj5g3v1697360.1 371 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDTEIDAAKAYDYAAFRMRG 421
                      7********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.4609.2E-1191241No hitNo description
SuperFamilySSF537844.19E-3892264IPR000023Phosphofructokinase domain
Gene3DG3DSA:3.30.730.107.9E-31371430IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-22371430IPR016177DNA-binding domain
PROSITE profilePS5103224.882371429IPR001471AP2/ERF domain
SMARTSM003801.2E-34371435IPR001471AP2/ERF domain
PfamPF008476.4E-13371421IPR001471AP2/ERF domain
PRINTSPR003671.6E-12372383IPR001471AP2/ERF domain
CDDcd000181.92E-13379429No hitNo description
PRINTSPR003671.6E-12411431IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006096Biological Processglycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003872Molecular Function6-phosphofructokinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDLCSSLSKF HSPFPSLTIS PQFSLHPQLL QIPRNSFSQC GIFLRKPLPL PPPFSRQNNL  60
SIRAAQVPNG IENDDFVLED VPHLTDFLPN LPDCCLIPES PFYLEGRGGL FEFIEQRLKE  120
NGHLVIVVAE GAGQEYIAAE VHAAGEKDAS GNKLLLDVGP WLSNKIKDHF SKVQKMAINM  180
KYIDPTYMIR AIPSNASDNI YCTLLAHSVV HGAMAGYTGF TVGPVNSKHA YIPIARVTET  240
QNTVKLTDRM WARVLESTNQ PSFVASDHER IDNEIIKHLL GDISDSYLTN LIPVKLEDSS  300
SEFDLDSLFS EQSSFCTFLE SFSFQADTEV AMSHEAKNSI TPTHSGETQK SSSPEPEVSG  360
KQEQTCYQGR RYRGVRRRPW GKFAAEIRDP TRKGTRVWLG TFDTEIDAAK AYDYAAFRMR  420
GRKAILNFPL EAGKASPKPS NSGRKRGREQ RESGTSSSHV MS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-28368430264ATERF1
3gcc_A4e-28368430264ATERF1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.91390.0floral bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1697360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105270.0AP010527.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT135A04, TM1816, complete sequence.
GenBankAP0105290.0AP010529.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT45M19, TM1126b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGLYMA10G33820.11e-115(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-30ERF family protein