PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1812820.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 613aa    MW: 68110.6 Da    PI: 7.4235
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1812820.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23123224199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   + 
  Lj5g3v1812820.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKRLVAGDSIVFL--RA 212
                      89****************************986445444..8************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  Lj5g3v1812820.1 213 ENGDLCVGIRRA 224
                      88999****997 PP
2Auxin_resp114.11.3e-37280363183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+++a ++ +FevvY+Prast+eF+vk+++v+++++++++ GmRfkm fetedss++++ +Gt+++vs +dp+rWp+S+Wr+L+
  Lj5g3v1812820.1 280 AVSSAVNGRPFEVVYYPRASTPEFCVKASSVKASMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVSVADPIRWPDSPWRLLQ 363
                      56788999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-37118226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-29122224IPR015300DNA-binding pseudobarrel domain
CDDcd100178.20E-22122223No hitNo description
PROSITE profilePS5086313.14123225IPR003340B3 DNA binding domain
SMARTSM010198.7E-20123225IPR003340B3 DNA binding domain
PfamPF023622.9E-21123224IPR003340B3 DNA binding domain
PfamPF065071.1E-32280363IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MFVVMDSMER TTERCLDSQL WHACAGAMVQ MPPLNTKVFY FPQGHAEHAH GGGKINFGQH  60
RVPPLIPCRV SAMKYMADPD TDEVFVKMRL TPLREHELDL EENDCSNFLG GNNNSEEKVP  120
SSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTIIAKDMHG QCWKFRHIYR  180
GTPRRHLLTT GWSNFVNHKR LVAGDSIVFL RAENGDLCVG IRRAKKGIGG GTELFSSGWN  240
NNQVAPTMFG SGFLCKSENN RKNGDEFFMG RVTGESVVEA VSSAVNGRPF EVVYYPRAST  300
PEFCVKASSV KASMQIQWCS GMRFKMPFET EDSSRISWFM GTISSVSVAD PIRWPDSPWR  360
LLQVVWDEPD LLQNVKSVNP WLVELVSNMP TFNLSPFSPP RKKQRLIQDP YFHLINQLPV  420
PSSLSNNLLS YTNSLCNMKD NNYSSAGIQG ARHVQCGPTP SSDFPFKILQ PDFSRFDHET  480
QPIRPHCGNG NSYKSSTKTN VDISCLLTVG NHGQSFKESN EVKAPHILLF GKIIHTEQKS  540
SNSLNSSAST NGNSLSEGSN SMKTSSNASH DLGFALHQNS PIENSSDGGS HWYKDQHNSD  600
LGTENVTSLC VAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-781138446388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.224490.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1812820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027366116.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3V9S50.0A0A1S3V9S5_VIGRR; Auxin response factor
STRINGGLYMA10G35481.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]