PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1853060.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 223aa    MW: 24304.9 Da    PI: 7.3388
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1853060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.91.5e-42661651100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+l
  Lj5g3v1853060.1  66 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQL 159
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++e
  Lj5g3v1853060.1 160 AKAQAE 165
                      **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.99265166IPR004883Lateral organ boundaries, LOB
PfamPF031958.9E-4366163IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAHKVNSPPI PIHVPTMFSN SPPSSSSSPP TQSPIPFPSP SQRSPSATAA AAPPPPTSPQ  60
PVVVSPCAAC KILRRRCVEK CVLAPYFPPT DPLKFTIAHR VFGASNIIKF LQELPESQRA  120
DAVSSMVYEA NARIRDPVYG CAGAICQLQK QVSELQAQLA KAQAEMVNMQ CQHANLLALI  180
CMEMTQTQSP EQQQNIIQPQ THVDMSCFLE DNNFGSAWEP LWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-42561713116LOB family transfactor Ramosa2.1
5ly0_B1e-42561713116LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1853060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1474990.0BT147499.1 Lotus japonicus clone JCVI-FLLj-12B19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208327.11e-108LOB domain-containing protein 1
SwissprotQ9LQR06e-77LBD1_ARATH; LOB domain-containing protein 1
TrEMBLI3T4511e-161I3T451_LOTJA; Uncharacterized protein
STRINGGLYMA10G35760.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-67LOB domain-containing protein 1