PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1853190.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 266aa    MW: 30549.5 Da    PI: 5.1099
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1853190.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS156.13.2e-48762561181
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl+ A+ v++ +l +  + L+ l +++s +gd++qR++ayf+ +L a+l+ + s  y+ +  ++t    s+ee+ a++ ++ vsP+++f+
  Lj5g3v1853190.1  76 LIHLLLTTATSVDETNLDASLENLTDLYQTVSLTGDSVQRVVAYFADGLVAKLLTKKSPFYDMVMEEPT----SDEEFLAFTDLYRVSPYYQFA 165
                      689****************************************************99999998877777....5899999999*********** PP

             GRAS  95 hltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnv 180
                      h+taNqaIlea+e+e     + +H+iDfd+s+G+QWp+L+q+L++++  ++  slRiTg+g+    + +el+et++rL +f + + ++ fef+ 
  Lj5g3v1853190.1 166 HFTANQAILEAFEKEeqknnKSLHVIDFDVSYGFQWPSLIQSLSEKAtsNNRISLRITGFGK----NMKELQETESRLVSFSKGFhNLVFEFQG 255
                      *************9987777889***********************9766677*********....9***************9875799***99 PP

             GRAS 181 l 181
                      l
  Lj5g3v1853190.1 256 L 256
                      7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.75750266IPR005202Transcription factor GRAS
PfamPF035141.1E-4576256IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEDSEEEELL NLSLSVPADR ERKRKGKTTR ESGVCVSVTR NTYEGCEGKI FRLLQMREQM  60
LRQDQRRKDE NNGLPLIHLL LTTATSVDET NLDASLENLT DLYQTVSLTG DSVQRVVAYF  120
ADGLVAKLLT KKSPFYDMVM EEPTSDEEFL AFTDLYRVSP YYQFAHFTAN QAILEAFEKE  180
EQKNNKSLHV IDFDVSYGFQ WPSLIQSLSE KATSNNRISL RITGFGKNMK ELQETESRLV  240
SFSKGFHNLV FEFQGLLRGS RVINLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-26652538192Protein SCARECROW
5b3h_A5e-26652537191Protein SCARECROW
5b3h_D5e-26652537191Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1853190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027367900.11e-162scarecrow-like protein 18
TrEMBLA0A371H4W61e-159A0A371H4W6_MUCPR; DELLA protein GAI (Fragment)
STRINGGLYMA10G35920.21e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-27GRAS family protein