PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1853200.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 172aa    MW: 19494.4 Da    PI: 7.3859
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1853200.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS121.21.3e-374170225374
             GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWr 316
                      +++L +v sl+P +vv+veqe  + s +Fl rf+++l+y++a+fdsl+  lp es er  +E++llg+ei++++    +      + e++e+W+
  Lj5g3v1853200.1   4 SDTLGFVHSLNPSIVVLVEQEGGRCSRTFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNYDVDGvgDCPKYERMETWK 97 
                      579***********************************************************************8765442278899******* PP

             GRAS 317 erleeaGFkpvplsekaakqaklllrkvk.s.......dg.....yrveee.sgslv.lgWkdrpLvsvSaWr 374
                       r+e+ GF+ +++s+k + qaklll++           dg     +rv e+ +g ++ lgW++r L++vSaW+
  Lj5g3v1853200.1  98 LRMENHGFGGMKISSKSMIQAKLLLKMRTnYcplqfeeDGgggggFRVSERdEGRAIsLGWQNRFLLTVSAWQ 170
                      *************************986522111111122333447776555555667**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.4561135IPR005202Transcription factor GRAS
PfamPF035144.4E-354170IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKVSDTLGFV HSLNPSIVVL VEQEGGRCSR TFLSRFTDSL HYFAAMFDSL DDCLPLESAE  60
RLRIEKKLLG KEIKSMLNYD VDGVGDCPKY ERMETWKLRM ENHGFGGMKI SSKSMIQAKL  120
LLKMRTNYCP LQFEEDGGGG GGFRVSERDE GRAISLGWQN RFLLTVSAWQ PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-214171232380Protein SCARECROW
5b3h_A2e-214171231379Protein SCARECROW
5b3h_D2e-214171231379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1853200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027933864.11e-106protein SCARECROW-like
TrEMBLA0A4D6N2J31e-105A0A4D6N2J3_VIGUN; DELLA protein
STRINGGLYMA20G31680.21e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-24RGA-like 2