PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1937410.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 271aa    MW: 28960 Da    PI: 8.7915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1937410.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-203988255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Lj5g3v1937410.1 39 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDDAALRFRG 88
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-3839102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-333997IPR001471AP2/ERF domain
PROSITE profilePS5103225.6993996IPR001471AP2/ERF domain
PfamPF008477.1E-143988IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-233997IPR016177DNA-binding domain
PRINTSPR003675.5E-124051IPR001471AP2/ERF domain
CDDcd000188.71E-154798No hitNo description
PRINTSPR003675.5E-126278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MFVYVIFVLI GTATEAATTA TSSEASASPS EESGERRRRY RGVRQRPWGK WAAEIRDPHK  60
AARVWLGTFD TAEAAARAYD DAALRFRGNR AKLNFPENVA PVAPVRPMNV HAFPTIRTTV  120
SASPATLYSP APPQPPIFPF QGQGTSDSIR DYWEYSQLLK GSGDIHGLEQ WFYESQMAAL  180
HSSQQMAALH SSSSSLLSPS QSLSLSSSSS PTAFSPSSQL SSASFPLFSG QQVGLFRPPG  240
DPSRGGGDGG SGSGFPPSTW SDTSGYPPPP G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-233899466ATERF1
3gcc_A8e-233899466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439ERRRRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.156350.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1937410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786374e-54AB378637.1 Lotus japonicus LjERF17 mRNA for transcription factor AP2-EREBP, complete cds.
GenBankAP0097044e-54AP009704.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT11L13, TM1756, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189730.12e-73ethylene-responsive transcription factor ERF110-like isoform X3
TrEMBLA0A3Q7YF144e-72A0A3Q7YF14_CICAR; ethylene-responsive transcription factor ERF110-like isoform X3
STRINGXP_004496448.14e-72(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.14e-20ERF family protein