PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1986510.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 341aa    MW: 37866.8 Da    PI: 6.2803
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1986510.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29192249359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+++ +++++tY+g+H h+
  Lj5g3v1986510.1 192 DLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNTEDDIFIVTYTGDHSHP 249
                      99************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-29176251IPR003657WRKY domain
PROSITE profilePS5081131.605185251IPR003657WRKY domain
SuperFamilySSF1182904.58E-25187251IPR003657WRKY domain
SMARTSM007742.9E-34190250IPR003657WRKY domain
PfamPF031066.2E-25192249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAEDWDLFAI VRSCQSATNT ATAPIGNPPP PTTNTTPPSL ATFTFKEEYN EAFSFPNIVQ  60
PITNEFHDLN QLLTPFNPTT NTTSSANGIN TNSPDFAGCI GQHQSNHHHL SVLAPPSKTS  120
IWPSTSSFNR RQHVQKNQNQ LPIVQKQDFQ VPQSNSALIS SNPQPQTPKA RKRKNQQKKM  180
VCHVTADNLS LDLWAWRKYG QKPIKGSPYP RNYYRCSSSK GCAARKQVER SNTEDDIFIV  240
TYTGDHSHPR PTHRNSLAGS TRNKSMPSLQ TKTTSTTTSC SSPLSSSTPV YPPAEDPPAT  300
DDPDPDPEIE TDNDVEDEAD ILLPIDVAMP DDMFMDFDHF P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-201922521880Disease resistance protein RRS1
5w3x_D9e-201922521880Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1986510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364705.11e-118probable WRKY transcription factor 27
TrEMBLA0A371DZZ31e-107A0A371DZZ3_MUCPR; Putative WRKY transcription factor 27 (Fragment)
STRINGXP_007143479.11e-105(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-57WRKY DNA-binding protein 27