PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v1988740.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Protein Properties

Length: 84aa MW: 9651.89 Da PI: 7.5113

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1988740.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.5	2.1e-17	2	80	19	96
-HHH.HTT..---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 19 pkkfaeeh..ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 p++f ++h g+ ++ t+ + d++ +W+v + ++ + +r+ l++GW++F+++n+L++gD ++F+l +r+ +++v+v Lj5g3v1988740.1 2 PNDFSRKHlyGLH--GNATIGIGDQDLtSTWNVSFMFDYSTDRTRLGNGWRKFCQDNNLQVGDACIFELLKRDPVTFKVHV 80 8899999976554..667899989665599**************************************8866555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	14.395	1	84	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.35E-16	1	79	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.61E-14	1	80	No hit	No description
Pfam	PF02362	1.0E-14	2	80	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.1E-15	2	80	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MPNDFSRKHL YGLHGNATIG IGDQDLTSTW NVSFMFDYST DRTRLGNGWR KFCQDNNLQV 60 GDACIFELLK RDPVTFKVHV SIQI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1988740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009788	1e-141	AP009788.1 Lotus japonicus genomic DNA, clone: LjT02J13, TM2022, complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19243	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	2e-10	related to vernalization1 1