 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Lj5g3v1988830.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
GRAS |
| Protein Properties |
Length: 638aa MW: 70362.7 Da PI: 6.402 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj5g3v1988830.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 331.5 | 1.6e-101 | 273 | 638 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
++ L+e+A a+s+g+le+a+++L+rl + ++p+g++ qR + +++ AL++rl++ a +p + +e s e++ +++l++e s ++k+++
Lj5g3v1988830.1 273 KQSLMEAASAISEGKLEAASEILSRLGQASNPNGNSDQRFTDCMVSALKSRLNQ-------AENPPPVAELFSREHAESTQLLFEHSVCFKVAF 359
578**************************************************9.......334444444559999****************** PP
GRAS 96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
++aN aIlea+ + ++ ++Df+i++G Q+++Ll++L++R +g+p ++++ +v++ g e+l+++g+ L + Ae+l++ fef+v v+
Lj5g3v1988830.1 360 MAANLAILEAAFDDtattsMKLCVVDFEIGHGRQYVSLLHELSARLAGKPvTVKVIAVAE--DGADERLKTVGDMLGQQAERLRIGFEFKV-VS 450
*********9755445655888************************887779******99..669*************************9.78 PP
GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
+l++l+ e+L ++p+E+laVn++++l+r++desvs+e++rde+L+ vk lsP+vv++veqe+++n+++F+ r++e+++yysalfds+e++++r
Lj5g3v1988830.1 451 CKLAELTREALGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKALSPRVVTLVEQELNTNTAPFVPRVTESCSYYSALFDSIESTVAR 544
99******************************************************************************************** PP
GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
es er+k+E+ l+r++ n vaceg++r+er+e ++kWr+r+++aGF+ p+++++a+++ + l + +v+ee+g ++ gW +r+L+++S
Lj5g3v1988830.1 545 ESLERVKIEQG-LSRKVGNSVACEGRDRVERCEVFGKWRARMSMAGFRLRPVGQRVAESITAQLGAEN--RVTVKEENGGICCGWVGRTLTVAS 635
***********.***********************************************999999888..489********************* PP
GRAS 372 aWr 374
aWr
Lj5g3v1988830.1 636 AWR 638
**8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 638 aa
Download sequence Send
to blast |
MSSPGGGAPN FYGGFPGRSN NNNNFTTTTS TTHNLHPLYR TQQQLPPIFL DPSLSHIAQR 60
QTPSIIGKRT LAEFQIQNHQ NQNQNQNQIQ NPVLSNLLLR SVKPRNFHHA SPIDFSTSSP 120
EFSNSFSSTS SFPSQRLPFY NHLHSNVSQQ QSPFPITNSN PTNPNFPYQI SNFSQVLNRA 180
TTTTTTHEPE KRVMDHRLQE LEKQLLEDSD DDEEGDAVSV ITNSEWSETI QSLIGAGQNN 240
PTRKPDLSSP TSSTTSTNST ITSMASPAPT CSKQSLMEAA SAISEGKLEA ASEILSRLGQ 300
ASNPNGNSDQ RFTDCMVSAL KSRLNQAENP PPVAELFSRE HAESTQLLFE HSVCFKVAFM 360
AANLAILEAA FDDTATTSMK LCVVDFEIGH GRQYVSLLHE LSARLAGKPV TVKVIAVAED 420
GADERLKTVG DMLGQQAERL RIGFEFKVVS CKLAELTREA LGCEPDETLA VNFAFKLFRM 480
PDESVSTENP RDELLRRVKA LSPRVVTLVE QELNTNTAPF VPRVTESCSY YSALFDSIES 540
TVARESLERV KIEQGLSRKV GNSVACEGRD RVERCEVFGK WRARMSMAGF RLRPVGQRVA 600
ESITAQLGAE NRVTVKEENG GICCGWVGRT LTVASAWR
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP009788 | 0.0 | AP009788.1 Lotus japonicus genomic DNA, clone: LjT02J13, TM2022, complete sequence. |
