PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v1999250.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Nin-like

Protein Properties

Length: 684aa MW: 74603.8 Da PI: 5.9705

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v1999250.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	8.1e-29	294	344	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Lj5g3v1999250.1 294 EKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 344 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	283	364	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-25	297	344	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-23	587	674	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.2E-26	589	670	No hit	No description
Pfam	PF00564	7.4E-19	589	670	IPR000270	PB1 domain
PROSITE profile	PS51745	25.247	589	671	IPR000270	PB1 domain
SMART	SM00666	1.4E-25	589	671	IPR000270	PB1 domain
CDD	cd06407	6.80E-39	590	670	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MLLNQICNEG RQNALSEILE ILTVVCETHN LPLAQTWVPC RHRSVLAHGG GLKKICSSFD 60 GSCMGQVCMS ITDVASYIID PHLWGFREAC VEHHLQQGQG VAGRAFSSHS MCFCPNITQF 120 CKTDYPLVHY ALMFGLTSCF AICLRSSHTG DDDYVLEFFL PPRITHFSEQ KTLVGSILAT 180 MKQHFQSLKI AAGVELEDGG SVEIIEATNE RVTLRLESIP IAQSVQSPPG PGGSPNMVEE 240 VPKDPSEQQT MMNCNDMNEG GAHGDNAGGN IDQMSSLETK TMKKPSERKR GKTEKSISLE 300 VLQRYFAGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKRVIESVQG 360 AEGAFGLNSL STSPLPVVGS FPEPSTPNKF SQQASMRPLE SQMKENEIDA SKILEIEDPL 420 LGGMTQNLEK VFNDKGPRRI RTGSGSSEDS TNPTSHGSCY GSPPIESSHV KDISITSNNE 480 RCVVPRGSPE SSPLQPINTL NSPSPIPIPD IVLTELQEPF GGMLIEDAGS SKDLRNLCPS 540 AAEAILEDQV PEACPTNNPP GCSSLAPKRP VDTLGKTVTP FAAKKEMKTV TIKATYREDI 600 IRFRVSLTCG IVELKEEVSK RLKLEVGTFD IKYLDDDQEW VLIACDADLQ ECIDVSRSSA 660 SHIIRVLVHD ITSNLGSSCE SSGE

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MLLNQICNEG RQNALSEILE ILTVVCETHN LPLAQTWVPC RHRSVLAHGG GLKKICSSFD  60
GSCMGQVCMS ITDVASYIID PHLWGFREAC VEHHLQQGQG VAGRAFSSHS MCFCPNITQF  120
CKTDYPLVHY ALMFGLTSCF AICLRSSHTG DDDYVLEFFL PPRITHFSEQ KTLVGSILAT  180
MKQHFQSLKI AAGVELEDGG SVEIIEATNE RVTLRLESIP IAQSVQSPPG PGGSPNMVEE  240
VPKDPSEQQT MMNCNDMNEG GAHGDNAGGN IDQMSSLETK TMKKPSERKR GKTEKSISLE  300
VLQRYFAGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKRVIESVQG  360
AEGAFGLNSL STSPLPVVGS FPEPSTPNKF SQQASMRPLE SQMKENEIDA SKILEIEDPL  420
LGGMTQNLEK VFNDKGPRRI RTGSGSSEDS TNPTSHGSCY GSPPIESSHV KDISITSNNE  480
RCVVPRGSPE SSPLQPINTL NSPSPIPIPD IVLTELQEPF GGMLIEDAGS SKDLRNLCPS  540
AAEAILEDQV PEACPTNNPP GCSSLAPKRP VDTLGKTVTP FAAKKEMKTV TIKATYREDI  600
IRFRVSLTCG IVELKEEVSK RLKLEVGTFD IKYLDDDQEW VLIACDADLQ ECIDVSRSSA  660
SHIIRVLVHD ITSNLGSSCE SSGE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v1999250.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027363207.1	0.0	protein NLP6-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2Z5V8A6	0.0	A0A2Z5V8A6_LOTJA; Nodule inception-like protein
STRING	GLYMA10G37860.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]