PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2029620.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26494.1 Da    PI: 9.4191
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2029620.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.3e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     +ri+nk+nrqvtfskRr g+lKKA+ELS LCdae+a+iifss+gkl+ yss
  Lj5g3v2029620.2  9 ERIQNKINRQVTFSKRRSGLLKKAFELSLLCDAEIALIIFSSRGKLFQYSS 59
                     69***********************************************96 PP
2K-box69.11.4e-2378172498
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      s++ +l+e+++++l+qel+ L+ + e+L+r qR++lGe+Le+Ls+keLq+Le+qL++ l++ R+ +++ l++ ++el++  ++l+e+nk+L+ k
  Lj5g3v2029620.2  78 SQTGDLSEHQSQRLYQELSVLRVKHESLERMQRNFLGEELEPLSMKELQSLEKQLDRTLSQARKYQTQKLTARVDELRQEVHNLEEANKQLKFK 171
                      5666799************************************************************************************977 PP

            K-box  98 l 98 
                       
  Lj5g3v2029620.2 172 E 172
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.796161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-37160IPR002100Transcription factor, MADS-box
CDDcd002654.36E-37278No hitNo description
SuperFamilySSF554552.22E-30276IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-293859IPR002100Transcription factor, MADS-box
PfamPF014867.7E-2085171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.72488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRGKVVLER IQNKINRQVT FSKRRSGLLK KAFELSLLCD AEIALIIFSS RGKLFQYSST  60
DMCRIIEKYR ESCFNSMSQT GDLSEHQSQR LYQELSVLRV KHESLERMQR NFLGEELEPL  120
SMKELQSLEK QLDRTLSQAR KYQTQKLTAR VDELRQEVHN LEEANKQLKF KEKDICTKTC  180
EGSTNSTSFV YNNHVLHDAE TDQFESGKTN RFRHLQQGAS KGKAMDTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-25171171MEF2C
5f28_B4e-25171171MEF2C
5f28_C4e-25171171MEF2C
5f28_D4e-25171171MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the floral meristem, lodicule, palea, lemma, receptacle, empty glume, stamen, pistil, and ovule. {ECO:0000269|PubMed:19820190}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2029620.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364725.11e-115MADS-box transcription factor 17-like
SwissprotQ7XUN22e-62MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A1S2Y0311e-108A0A1S2Y031_CICAR; MADS-box transcription factor 17-like isoform X2
STRINGXP_004496628.11e-106(Cicer arietinum)
STRINGGLYMA10G38580.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.16e-54AGAMOUS-like 6
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]