PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2030810.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 193aa    MW: 21393.7 Da    PI: 8.3369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2030810.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-072070254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     + +  e+Er+RR ++    + Lr+ lP  +    ++K s ++   +Av++++ L
  Lj5g3v2030810.1 20 KINRREVERQRRTQMSVLCASLRSSLPLeL---IKGKRSVSDLIGEAVNHVQFL 70
                     667889**********************78...******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-111791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.62E-71874No hitNo description
PROSITE profilePS5088811.7121870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-82086IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-42070IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00412476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAEDKIQRII SSTSDNDEKK INRREVERQR RTQMSVLCAS LRSSLPLELI KGKRSVSDLI  60
GEAVNHVQFL KQKINALQIK RDELKEMMVN LSFVKTETVG ADHSSALGKC VSINLIPGGV  120
EVAVYGSGFE ENSTRLSVLM QILLQEGCDV VSCVSSLVNG RIFHTIKSEA STQIGSSNLV  180
KVTMPVERTM WDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2030810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556078.31e-74transcription factor bHLH36
RefseqXP_028221504.11e-74transcription factor bHLH36-like
TrEMBLA0A445F5C33e-73A0A445F5C3_GLYSO; Transcription factor bHLH120 isoform A
TrEMBLI1NGM89e-74I1NGM8_SOYBN; Uncharacterized protein
STRINGGLYMA20G29130.12e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-23bHLH family protein