PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2030840.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 258aa    MW: 29883.2 Da    PI: 9.0103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2030840.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-1074126155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++ h e+E++RR+++ +  + Lr+llP  +   ++K s ++   ++v+YI++Lq
  Lj5g3v2030840.1  74 KKMVHREIEKQRRQEMATLHASLRSLLPLHF--IKGKRSLSDQMNEVVNYINHLQ 126
                      6889*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-1272143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.56E-872130No hitNo description
PROSITE profilePS5088812.64673125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-774126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-974148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MFPLQRSNKL ATPFSNSVRH RQHKISEDQI LDDCDSLVVD FSDKKLSSGR TKRILYHSTA  60
GTTHANNSEE FKKKKMVHRE IEKQRRQEMA TLHASLRSLL PLHFIKGKRS LSDQMNEVVN  120
YINHLQKNIK ELSDKRDELN NLSNILKKDH ASASFTFHQS DGCVGIEITS GFREEEGLPV  180
SKLLEILLEE GLEVVSCIST KVNGKLLHSM QCEVWRSREC YHFVFLFYKS YSNIFMFILL  240
TELRRKISNV IQSFSCSD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.178590.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2030840.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1470550.0BT147055.1 Lotus japonicus clone JCVI-FLLj-11B3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592388.25e-95transcription factor bHLH118 isoform X2
SwissprotQ9FLI18e-34BH036_ARATH; Transcription factor bHLH36
TrEMBLG7ID491e-93G7ID49_MEDTR; Putative transcription factor bHLH family
STRINGXP_004496640.14e-91(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-31bHLH family protein