PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2045560.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CPP
Protein Properties Length: 483aa    MW: 52595 Da    PI: 8.2754
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2045560.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.34.7e-16200238240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+CnCkkskClk+YCeCfa+g++C+e C C +C N+ 
  Lj5g3v2045560.1 200 SCKRCNCKKSKCLKLYCECFASGVYCTEPCMCRNCLNQP 238
                      689**********************************86 PP
2TCR49.21.1e-15285323139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce CkN 
  Lj5g3v2045560.1 285 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEACKNA 323
                      589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.7E-17199240IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.477200325IPR005172CRC domain
PfamPF036381.3E-11202237IPR005172CRC domain
SMARTSM011148.2E-16285326IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.6E-11287323IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MQPVNLAASG SEHGIQYHPN GPITGQTQNN LPSVALMTSN PSEKMNDELL QATYRGMRRS  60
LDYEMASVQR KNSGGSSHIS SSTAKSDERG IENPLLPTKH TCDSHLNPLA TLKDYKSSKG  120
EPMSSQMQPN LPSSTSSMLL SSRQEGPQSM ENDLEPSEGE VQPAEDYTQS PGYMADEDFH  180
PNVPKKKRRK LELSGGGESS CKRCNCKKSK CLKLYCECFA SGVYCTEPCM CRNCLNQPIH  240
AETVLQARKQ IESRNPLAFA PKVIRSSVST PETRDDPNKT PASARHKRGC NCKKSSCLKK  300
YCECYQGGVG CSISCRCEAC KNAYGRKDGS GPSEIEAEPE EETKAREKSE VGKASQKTNI  360
QNTEDQSECA LPTTPSRRLL PLPFSSDGNP SRSFIATISA SGLIASQKLG ESNALQSQVT  420
LEKPFQTVPD DDDSSGHCIK ISSPKGKRIS SPRCENGSPH TRRGGRKLIL QSIPSFPSLA  480
PPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1620432214120Protein lin-54 homolog
5fd3_B2e-1620432214120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183190PKKKRRKL
2184188KKKRR
3184189KKKRRK
4185189KKRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}.
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2045560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104420.0AP010442.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT127E18, TM1719, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143298.10.0hypothetical protein PHAVU_007G060500g
SwissprotF4JIF51e-103TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLV7BBQ70.0V7BBQ7_PHAVU; Uncharacterized protein
STRINGXP_007143298.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-77TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]