PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v2045620.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TCP

Protein Properties

Length: 223aa MW: 25288.1 Da PI: 8.1397

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v2045620.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	67.9	3.5e-21	1	107	38	133
TCP 38 eLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssg...............kaaksaakskksqksaasalnla 111 +L fdk+s+t+eWL+++++ ai+el+++ ss+s+++ +++++ + + +s+ k +++++ ++l+ + Lj5g3v2045620.1 1 MLEFDKPSNTLEWLFTKSESAIQELARSkncscSSNSNNNPSNNNK---------SlfgggdnhngtnsirGRGNSKLKWTTQRDQDVCVLQNK 85 89************************555441112211112222.........133334444456777577777779*********** PP TCP 112 kesrakarararertrekmrik 133 kesr++arararert km + Lj5g3v2045620.1 86 KESRERARARARERTCYKMLED 107 ****************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-15	1	104	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	16.572	1	25	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.643	86	103	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MLEFDKPSNT LEWLFTKSES AIQELARSKN CSCSSNSNNN PSNNNKSLFG GGDNHNGTNS 60 IRGRGNSKLK WTTQRDQDVC VLQNKKESRE RARARARERT CYKMLEDQRC PANTTQIMHQ 120 LRSSSPIQLL QPYPHLMDNS EAVSGGGGGD GFNVIEESIM IKRNMMSSNS HPHENHHLAI 180 PNKEAGFNNN YIDYPLLQPY STTPNWEIAT MNMNLSTCFM NQW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	98	RERARARARER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v2045620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010441	0.0	AP010441.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT32M13, TM1651, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020232454.2	2e-49	transcription factor DICHOTOMA isoform X1
Refseq	XP_029128870.1	9e-50	transcription factor DICHOTOMA isoform X2
TrEMBL	Q1WK56	1e-166	Q1WK56_LOTJA; CYC3
STRING	GLYMA20G28670.1	1e-48	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Publications ? help Back to Top
Feng X, et al. Control of petal shape and floral zygomorphy in Lotus japonicus. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(13): p. 4970-5 [PMID:16549774]