PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2099760.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 231aa    MW: 25034.4 Da    PI: 8.2272
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2099760.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.69.7e-2934135196
           DUF260   1 aCaaCkvlrrkCakd.Cvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                      +C++C+vlr++C+ d C+l+ ++     p++q++++ +v+k+FG+++++++l+++p+++r+++++sl+yeA  ra +Pv+Gavg+++++++ql+
  Lj5g3v2099760.1  34 SCNGCRVLRKGCSGDdCMLRHCLrwiesPQAQANATVFVAKFFGRATLMSFLSSVPTNQRSALFESLLYEAVGRALNPVSGAVGLLWSGNWQLC 127
                      6***********9655****************************************************************************** PP

           DUF260  89 qlkaelal 96 
                      q+ +e +l
  Lj5g3v2099760.1 128 QSGVEKVL 135
                      *9887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.84933140IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-2434132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MLYSLSFLHI NPASFLHIYA LLTQDIHQSH KKMSCNGCRV LRKGCSGDDC MLRHCLRWIE  60
SPQAQANATV FVAKFFGRAT LMSFLSSVPT NQRSALFESL LYEAVGRALN PVSGAVGLLW  120
SGNWQLCQSG VEKVLQGGGA LTPLPQFSGV DHESSEGFES FIAGSSPSRK LKINHEAESS  180
GLVVGGGGGR CHQAKKQRVR TPSEESEGST LGNRGEDCGS DSERKLLPLF F
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2099760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1471420.0BT147142.1 Lotus japonicus clone JCVI-FLLj-4E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027367614.11e-91LOB domain-containing protein 38-like
SwissprotQ9SN231e-52LBD38_ARATH; LOB domain-containing protein 38
TrEMBLI3T3441e-143I3T344_LOTJA; Uncharacterized protein
STRINGXP_007143107.15e-81(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-55LOB domain-containing protein 38