PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2182590.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 301aa    MW: 32663.5 Da    PI: 8.0038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2182590.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-05112134123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ F ++  L  H++ H
  Lj5g3v2182590.1 112 FECQYCGREFANSQALGGHQNAH 134
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-6107138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.23E-7108139No hitNo description
PfamPF139121.5E-5112136IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.715112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010090Biological Processtrichome morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MQTCPILSHT FTIINNYPFF FFFFFFFIIN SKLKPLPMDY QHDYKTKTTN PTSPTPLKLF  60
GFNVHEEEQQ EAVHEDFTDS TTKTASSTSP SGSPDSGGVD GAFPPSSGDR KFECQYCGRE  120
FANSQALGGH QNAHKKERQQ LKRAQLQATR NAAASFARNP IISAFTPPPH LLAPPGPVMV  180
PTWAYMPTRG DATPPFHAPV SHGCVFPPAN RNGMCGSYNH HHHHNNVTVT GVKSAGAGLF  240
PYGGVVGDSS SAFSTMQVQA RAHNGRIDGP SMSQFSKVDG GPKFDDAWGL DLHLGLAPAG  300
P
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.220950.0protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2182590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414120.11e-117PREDICTED: zinc finger protein 6
TrEMBLA0A0L9U0L31e-115A0A0L9U0L3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SLV81e-115A0A0S3SLV8_PHAAN; Uncharacterized protein
STRINGXP_007142933.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31981316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-13C2H2 family protein