PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2241450.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 284aa    MW: 32775.3 Da    PI: 8.5814
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2241450.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.87.1e-1210683698
                     EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     + l+ +++ +We+    +k+ g+++++kGWk+F++   L+ g +vvFk++g+s f   v +++
  Lj5g3v2241450.1 10 VFLKVPDSTKWEIHW--TKQNGEVWFEKGWKQFAQNYSLDHGYMVVFKYEGTSHF--DVLILD 68
                     7889999********..*********************************99999..777776 PP
2B339.88.2e-13197281797
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ps+  +++   +p kf+ ++     + k+ ++ +++ r+W vk+    +   + lt GW+ F ++ +L++gD++vF++++r+  +l+v+v 
  Lj5g3v2241450.1 197 PSHLAENAVKQVP-KFM-DYA----NRKENVILQLEERRWPVKFVCFPNTPYHRLTCGWSLFIRESKLQVGDICVFEVIDREVPKLKVHVT 281
                      3333333322222.333.333....334567788899*******888888899*************************9999999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.196170IPR003340B3 DNA binding domain
SMARTSM010191.3270IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-13470IPR015300DNA-binding pseudobarrel domain
CDDcd100175.00E-11668No hitNo description
Gene3DG3DSA:2.40.330.101.7E-14780IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-91066IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-13186282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-13187280IPR015300DNA-binding pseudobarrel domain
CDDcd100174.30E-11189282No hitNo description
PROSITE profilePS5086310.729191284IPR003340B3 DNA binding domain
SMARTSM010190.0047191284IPR003340B3 DNA binding domain
PfamPF023621.4E-10195281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MYEGDLSNPV FLKVPDSTKW EIHWTKQNGE VWFEKGWKQF AQNYSLDHGY MVVFKYEGTS  60
HFDVLILDQS ALAIHYPSCD KNLDQGNNES VQFLGETTAH QNAIPEPAMF SSRSYKRMRN  120
DTPVNVDRNS NMRKLQAEAG DESGQGTKFN KTIKHKLEGV RTTLSTLSLN WPKTSRALEI  180
ALNFVTSNPY FTVLIVPSHL AENAVKQVPK FMDYANRKEN VILQLEERRW PVKFVCFPNT  240
PYHRLTCGWS LFIRESKLQV GDICVFEVID REVPKLKVHV TKVN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2241450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098581e-48AP009858.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT14K23, TM1780a, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-29B3 family protein