PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2242490.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 162aa    MW: 18451.6 Da    PI: 8.4637
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2242490.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.1e-18811611294
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      k+   ++p  f++++   +   +t  + + ++++W v+l+y++ +g+  +l++GW++Fv++ +L+egD++vF+l+++++f l+v
  Lj5g3v2242490.1  81 KNTDRSIPMGFINKYV--T-ARVTYAILQAKNKEWHVQLCYDREDGSaRFLSSGWSKFVRDCELEEGDTCVFELVDKEKFVLKV 161
                      555689******8884..3.34799999*************888888789************************9989995554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.15370162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-1772160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-1676161IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-1476162No hitNo description
SMARTSM010191.3E-976162IPR003340B3 DNA binding domain
PfamPF023624.4E-1680161IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MNNSAEVSYR VKIFRATKAS SPHHVEGAER GKQTSPGNNF AERGSERIAK KSSITNVLDN  60
DYDGSENNSR RLENQFTITL KNTDRSIPMG FINKYVTARV TYAILQAKNK EWHVQLCYDR  120
EDGSARFLSS GWSKFVRDCE LEEGDTCVFE LVDKEKFVLK VS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2242490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2179134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-12related to vernalization1 1