PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2244610.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 501aa    MW: 56498.5 Da    PI: 5.2582
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2244610.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12275318755
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +Er+RR+++N+++ +Lr+l+P  +      Kl+ a+iL  A+e++k+Lq
  Lj5g3v2244610.1 275 VAERKRRKKLNDRLYNLRSLVPRiS------KLDRASILGDAIEFVKDLQ 318
                      68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-10787IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.18E-12267322No hitNo description
PROSITE profilePS5088815.294268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-16271331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16274331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-15274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9275318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.86E-5403471No hitNo description
CDDcd048731.58E-4406469No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MIPHPRTKTC DLLSQLTTSI PTDSGIHAQT LLTNQPNWLN YSNSLDPNTL EETINGTQVL  60
IPVPGGLVEL FVTKQVPEDH HVIDFVTAQC IVLMDQEAVN LSASINIDVN SMSNMQSNPL  120
LGDENEGNNN NNRNHIHFQP SETSSLPHDI SMNRIGLCNS PLNFMQHFNY DQNNRMKNNT  180
FSEEYQGSFL YDKQGNLLNS KAEEEHDTYQ KCLMSTDTQY VDPLDNKEKQ EHKDLMKHVV  240
GRSDSMSDCS DQNEEEDDGK YRRRNGKGNQ SKNLVAERKR RKKLNDRLYN LRSLVPRISK  300
LDRASILGDA IEFVKDLQKQ VKELQDELEE NSDTGAESNC INGNNGQPDI PKAEHGKNQN  360
GFHVGAPGNG YVSKQKQEDA SATDKQTQQM EPQVEVALID GNEYFVKVFC EHRPGGFGKL  420
MEALNTLGMD VVHATVTSHK GLVSNVFKVE KKDSEMVEAE DVRDSLLELT RNRTRGWSHE  480
MTATSENGVG SREQHHLNNH Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261282RRRNGKGNQSKNLVAERKRRKK
2276283ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.88170.0floral bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2244610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364813.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A4D6N4L50.0A0A4D6N4L5_VIGUN; Transcription factor MYC2
STRINGGLYMA10G42830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-118bHLH family protein