PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2258280.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 70aa    MW: 7800.78 Da    PI: 9.0892
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2258280.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.35.8e-311970355
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55
                     +v+Y eC+kNhAa++Gg+avDGC+Efm+s geegt+++l CaACgCHRnFH++
  Lj5g3v2258280.1 19 SVKYGECQKNHAANVGGYAVDGCREFMAS-GEEGTSDSLACAACGCHRNFHKK 70
                     699*************************9.999******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-22170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.3E-292070IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.7E-262170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.8022270IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MRKRQVVVRR EDPQRNVRSV KYGECQKNHA ANVGGYAVDG CREFMASGEE GTSDSLACAA  60
CGCHRNFHKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.97811e-116pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, flowers and siliques, and, to a lower extent, in inflorescence. {ECO:0000269|PubMed:16412086}.
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v2258280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105711e-114AP010571.1 Lotus japonicus genomic DNA, clone: LjT17J13, TM1835, complete sequence.
GenBankBT1406511e-114BT140651.1 Lotus japonicus clone JCVI-FLLj-7L16 unknown mRNA.
GenBankBT1453541e-114BT145354.1 Lotus japonicus clone JCVI-FLLj-10M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151284.14e-41hypothetical protein PHAVU_004G033400g
RefseqXP_020205723.14e-41mini zinc finger protein 2
RefseqXP_020205875.14e-41mini zinc finger protein 2
SwissprotQ9LJW59e-29MIF2_ARATH; Mini zinc finger protein 2
TrEMBLI3SY065e-45I3SY06_LOTJA; Uncharacterized protein
STRINGXP_007151284.12e-40(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.14e-31mini zinc finger 2
Publications ? help Back to Top
  1. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]