PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj5g3v2258590.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TCP

Protein Properties

Length: 259aa MW: 28016.7 Da PI: 11.9621

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj5g3v2258590.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	24.4	9.4e-08	95	118	3	26
TCP 3 gkkdrhskihTkvggRdRRvRlsa 26 +kk +++++h+kv+gR+RR+R++ Lj5g3v2258590.1 95 VKKPPSKDRHSKVDGRGRRIRMPX 118 79********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MCPPPVSTSS CRSIIRPLFP LSPSIQSLPH STLNSSSSSS SSSSSSSIQI PRNSHCNKPY 60 SHFSLHLLTM SSSDGTTNGS MIDPQRTNQQ QQLSVKKPPS KDRHSKVDGR GRRIRMPXXX 120 XXXXXXXXXP LTPPPPPPPA PAPPPPASPP SLSRSAAPPT TPRSLLLRLT TNPCLLLLLL 180 RSFSGSVYAP TMIPPPPPRM TLLDTRLLAL LLLLVCGLFL LGLILDRYGA LLLPPPPRRK 240 WWGTRPCPGP VSAKRTPSA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj5g3v2258590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	2e-12	TCP family protein