PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v0227250.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 194aa MW: 22669.2 Da PI: 9.0434

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v0227250.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	90.1	3.9e-28	17	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l pG++F+Ptde lv++yLk++v +++l + +i+++d++++ePw Lp k +e++++f+ + + + + r++ sg W+ k k Lj6g3v0227250.1 17 LLPGYKFDPTDEVLVNFYLKRRVFAQPLLF-YIIPDFDVFQTEPWGLPgGdgK--IfNERKCFFYNTMGRDIE--NIDIRVAGSGQWRVMEKGK 105 579**********************888.78***********53333..236789999999999876..4789999**999999 PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +vl +++++g ++tL f++++ +++t+Wvmhe+rl Lj6g3v0227250.1 106 DVLIPqSNQVIGRRNTLNFWEEQGACARRTKWVMHEFRL 144 99887577789************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-35	13	163	IPR003441	NAC domain
PROSITE profile	PS51005	35.188	17	164	IPR003441	NAC domain
Pfam	PF02365	1.7E-16	19	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEDLIMTYVD EDGSVRLLPG YKFDPTDEVL VNFYLKRRVF AQPLLFYIIP DFDVFQTEPW 60 GLPGGDGKIF NERKCFFYNT MGRDIENIDI RVAGSGQWRV MEKGKDVLIP QSNQVIGRRN 120 TLNFWEEQGA CARRTKWVMH EFRLALIANP SKMANWAIYR IFKNKNAKKV NNMQEGVIRK 180 APMLVMPEVF DFNA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-20	9	169	9	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-20	9	169	9	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-20	9	169	9	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-20	9	169	9	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-20	9	167	12	171	NAC domain-containing protein 19
3swm_B	2e-20	9	167	12	171	NAC domain-containing protein 19
3swm_C	2e-20	9	167	12	171	NAC domain-containing protein 19
3swm_D	2e-20	9	167	12	171	NAC domain-containing protein 19
3swp_A	2e-20	9	167	12	171	NAC domain-containing protein 19
3swp_B	2e-20	9	167	12	171	NAC domain-containing protein 19
3swp_C	2e-20	9	167	12	171	NAC domain-containing protein 19
3swp_D	2e-20	9	167	12	171	NAC domain-containing protein 19
4dul_A	1e-20	9	169	9	170	NAC domain-containing protein 19
4dul_B	1e-20	9	169	9	170	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v0227250.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027352865.1	6e-60	NAC domain-containing protein 83-like
TrEMBL	A0A371E4A1	7e-49	A0A371E4A1_MUCPR; NAC domain-containing protein 41 (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13413	11	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-31	NAC domain containing protein 83