PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v0408380.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

M-type_MADS

Protein Properties

Length: 241aa MW: 27506.9 Da PI: 10.2994

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v0408380.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.8	1.2e-17	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK ELS+LC+++++ i++s+ Lj6g3v0408380.1 10 FITNDSARKATFKKRKKGLMKKVAELSTLCGIDACAIVYSP 50 89**************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.2E-25	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.792	1	49	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.66E-23	2	85	No hit	No description
SuperFamily	SSF55455	7.06E-25	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-18	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVAELSTLCG IDACAIVYSP YDPQPEVWPS 60 PLGVQRVLAK FRRMPELEQS KKMVNQESFL RQRIQKAKEQ LKKQRKDNRE KEITQLMFQC 120 LSAGKILHNI NMVDLNDLAW LIDQNLKDIN RRIEVLTKNA QSQAQAQMVA AAAPPVVTDI 180 VAKIEERSPE GNHGQGLDMN IDVMQKQHWF MNLMNSGGGD EALPLGDVNH QNGFWPNPFF 240 H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAFITNDSARKATFKKRK
2	21	25	KKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:16798889}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v0408380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009689	1e-160	AP009689.1 Lotus japonicus genomic DNA, clone: LjT40B16, TM1372, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007163366.1	1e-140	hypothetical protein PHAVU_001G228600g
Swissprot	Q9FJK3	6e-68	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	V7D1F9	1e-138	V7D1F9_PHAVU; Uncharacterized protein
STRING	XP_007163366.1	1e-139	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF452	33	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-70	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]