PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0435130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 258aa    MW: 28658.1 Da    PI: 7.6102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0435130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.4e-10172214855
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Lj6g3v0435130.1 172 AAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 214
                      569*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.7E-13161221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-14162223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-11162218No hitNo description
PROSITE profilePS5088815.364164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-7174214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MALAKHQITH DSINMGSKVQ TCVFNEYHHK SLLEEEGGSQ NTNGLSNDSA ITHSSPSLCG  60
TSNDGYVYHK STNYQLEEAE SLIDFKDSGK SNLMQASGSL LSFQKEHCVW ENDLQHQGYN  120
QWNQIQLGTQ ESVLKKRPSM GENMKAVKKQ CSTESIAPKP KSSSSKDPQS VAAKNRRERI  180
SERLKILQEL VPNGSKVDLV TMLEKAISYV KFLQLQVKVL ATDEFWPVQG GKAPDISQVK  240
EVIDAILSSQ RDRSSGSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0435130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-31AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019418372.11e-112PREDICTED: putative transcription factor bHLH086
TrEMBLA0A4P1QV661e-111A0A4P1QV66_LUPAN; Uncharacterized protein
STRINGGLYMA18G04420.12e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.13e-48RHD SIX-LIKE 1