PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0469890.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 218aa    MW: 24668.4 Da    PI: 4.2657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0469890.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.7e-14124210186
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+kv t+sd+   + l+lp  ++++h  ++ +   ++l++++gr++  +l+  +++g+    + ++k W++Fvk+n+Lk gD+v F+ d+
  Lj6g3v0469890.1 124 FDKVITKSDSKGDQTLSLPMMYVRNHVRPNWQ--HVVLQTPEGRTYACELKR-RNPGEddtpCNIGKDWNKFVKENKLKRGDTVHFRPDS 210
                      89************************777666..6***************65.44444479999**********************9554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-15123210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-16123213IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-11124209No hitNo description
SMARTSM010195.8E-5124215IPR003340B3 DNA binding domain
PfamPF023623.3E-12124210IPR003340B3 DNA binding domain
PROSITE profilePS5086311.603124218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDPVGGEFSF RLLAGNLGGL IFECVAEFLR RYGLKENHLC DFFYFGKNTF IVKILDGTLK  60
EISYGVGTSL SQPIVIDDGD EEAVDDEDPV GDDEDAEEDE EDDGIMEVSE GEEENGVNRV  120
LHPFDKVITK SDSKGDQTLS LPMMYVRNHV RPNWQHVVLQ TPEGRTYACE LKRRNPGEDD  180
TPCNIGKDWN KFVKENKLKR GDTVHFRPDS VANNMIYV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0469890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061270.0AP006127.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT48O21, TM0211, complete sequence.