PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v0484100.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 179aa MW: 20164 Da PI: 6.7679

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v0484100.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.2	3.2e-39	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+l+r+C+++C++apyf ++++kkf vhk+FGasnv+k+l ++pee+red+++sl+yeAe r++dPvyG++g i lq+++ +l+++l Lj6g3v0484100.1 11 SCAACKLLKRRCTPNCIFAPYFRSDERKKFTKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEERLKDPVYGCIGSIALLQRKMVELQHDL 104 6********************************************************************************************* PP DUF260 95 allkee 100 a +k++ Lj6g3v0484100.1 105 AIAKDR 110 999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.953	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-38	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MKGYEPRSSS SCAACKLLKR RCTPNCIFAP YFRSDERKKF TKVHKVFGAS NVSKILIEVP 60 EEQREDTVNS LAYEAEERLK DPVYGCIGSI ALLQRKMVEL QHDLAIAKDR LARVHAAAAT 120 STMLSSADIL HAHVSLPPFP DFPTCNDFND DMFCQSSSSS QSFGRHEMVD DFSEIPYMF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	6	113	6	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	6	113	6	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v0484100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417048.1	1e-104	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	2e-63	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A0L9UAM8	1e-102	A0A0L9UAM8_PHAAN; Uncharacterized protein
STRING	XP_007163564.1	1e-101	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	3e-64	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]