PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v0496230.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 234aa    MW: 26284.1 Da    PI: 9.4134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v0496230.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-125298354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++ +k+L
  Lj6g3v0496230.1 52 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDKVKDL 98
                     79*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.10E-943101No hitNo description
PROSITE profilePS5088814.7234998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1250106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1352101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-105298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1055104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048739.05E-5145180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MENYYHSGCH SYAHSPFPVP PHISASLQFS EFHSWSEPIE GASEERRISA SKSHSQAEKR  60
RRDRINAQLA TLRKLIPKSD KMDKAALLGS VIDKVKDLKR KAMEVSRVYT VPTEIDEVTI  120
DYDHVQDESC TKVNKCKDNI VIKASVCCDD RPELFSELIQ AFKGLRLTAV KADIASVGGR  180
IKSILVLYSK DTAENVCLST LKQSLKSAVT KIAGSNCPTR SKRQRFFIPS HFLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v0496230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1478530.0BT147853.1 Lotus japonicus clone JCVI-FLLj-14M22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552298.21e-133transcription factor bHLH51
TrEMBLI3T5551e-173I3T555_LOTJA; Uncharacterized protein
STRINGGLYMA18G02940.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.19e-51bHLH family protein