PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1018460.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 165aa    MW: 17725.4 Da    PI: 6.5161
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1018460.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.3e-113863227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     kte+C+ +  +G C+y ++C+FaHg+
  Lj6g3v1018460.1 38 KTEICKAWEDSGNCRYNSKCQFAHGK 63
                     9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-143568IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-93568IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-53663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5873764IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-83863IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDDIPMSGGK SGKSSSSSSS GRASSSSSSA PSGKSVIKTE ICKAWEDSGN CRYNSKCQFA  60
HGKEELHPVR SSMKKTKSEL YAAPEYERGV TRSQPASPEP HHTPSSSNNT LNDWSPLDDG  120
IEVLLPGSDK APSREEVDAY INSLRSGPTT KKRLSVFAAL SEEEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1018460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104231e-145AP010423.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT16M14, TM1779, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027347107.13e-46uncharacterized protein LOC113858602
RefseqXP_027347108.13e-46uncharacterized protein LOC113858602
TrEMBLA0A1S2YH811e-44A0A1S2YH81_CICAR; mRNA decay activator protein ZFP36L2-like
STRINGXP_004504769.12e-45(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-09C3H family protein