PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1048880.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 256aa    MW: 28809.8 Da    PI: 4.5605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1048880.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-162576155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Lj6g3v1048880.1 25 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 76
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-182586IPR016177DNA-binding domain
PfamPF008473.3E-122576IPR001471AP2/ERF domain
CDDcd000184.44E-252586No hitNo description
Gene3DG3DSA:3.30.730.106.5E-182685IPR001471AP2/ERF domain
SMARTSM003801.2E-242690IPR001471AP2/ERF domain
PROSITE profilePS5103218.3342684IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  60
EEAATAYDMA AIEYRGLNAV TNFDLSRYIK WLKPNQSNTD NNTKVTTSDQ DLVDSNPISN  120
TNNFIPDNPH DKKQSGLNNF FQSQESFNSS NGEEETITMV QPRPAAATSA LGLLLQSSKF  180
KEMMEMTSAA DLSTPAEYDI QLAPCAFPDD IQTYFECEDS SKYGEGDDDM NMIMFSDLNS  240
FVPPIFHCDD FEGLKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1048880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029125997.11e-127AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A151UF471e-125A0A151UF47_CAJCA; AP2-like ethylene-responsive transcription factor At1g16060 family
STRINGGLYMA06G30840.21e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.23e-52ARIA-interacting double AP2 domain protein