PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1053520.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 257aa    MW: 30027.6 Da    PI: 5.8933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1053520.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox542.8e-1763113656
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++  +q+++Le+ Fe ++++  e + +LA++lgL+ +qV +WFqNrRa++k
  Lj6g3v1053520.1  63 RLRFDQVKALERSFELDNKLEPEYKVKLAEELGLQPKQVAIWFQNRRARWK 113
                      45558*********************************************9 PP
2HD-ZIP_I/II122.81.6e-3959151193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl  +qvk+LE+sFe ++kLepe Kv+la+eLglqp+qva+WFqnrRAR+ktkqlE+dy  Lk+++d+lk e ++L++e+e+L+ +++e
  Lj6g3v1053520.1  59 EKKRRLRFDQVKALERSFELDNKLEPEYKVKLAEELGLQPKQVAIWFQNRRARWKTKQLERDYGILKSNFDHLKVEYSNLKQENEALTMKVRE 151
                      69*************************************************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.98555115IPR001356Homeobox domain
SuperFamilySSF466893.98E-1759117IPR009057Homeodomain-like
CDDcd000864.65E-1460116No hitNo description
SMARTSM003891.1E-1361119IPR001356Homeobox domain
PfamPF000461.4E-1462113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-1865122IPR009057Homeodomain-like
PRINTSPR000314.8E-58695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000314.8E-595111IPR000047Helix-turn-helix motif
PfamPF021831.2E-15115156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKRLNNSDTM ATLVSKFPSK AYAGVKQRNE TQGYSEEFQA MLDRLDQEDS YEDVSLVLEK  60
KRRLRFDQVK ALERSFELDN KLEPEYKVKL AEELGLQPKQ VAIWFQNRRA RWKTKQLERD  120
YGILKSNFDH LKVEYSNLKQ ENEALTMKVR ELKAKLIRVE SNESEKDESP NSEVRDRGAS  180
ESNSCGMLKE ESNVESPLCF NGSFPSSSPV KNWLHQSDSK GSPDRTFQNH LMRMEEQSFY  240
SINEFYSFFS VDQCPTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Localized primarily to the hypocotyl of germinating seedlings. {ECO:0000269|PubMed:12678559}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1053520.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346119.11e-136homeobox-leucine zipper protein ATHB-6-like isoform X1
SwissprotP466677e-47ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLA0A2Z6PTJ01e-128A0A2Z6PTJ0_TRISU; Uncharacterized protein
STRINGXP_007146109.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.13e-49homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]