PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1300850.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26537.8 Da    PI: 7.2935
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1300850.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-1885139256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tk q  +Le++F++n  ++a++++ LA++l+L+ rq+ vWFqNrRa+ k
  Lj6g3v1300850.1  85 RKKLRLTKAQSFRLEDAFKMNDSINAAQKQALAEELNLKPRQIEVWFQNRRARTK 139
                      788899***********************************************98 PP
2HD-ZIP_I/II100.21.9e-3285173190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rl+k q+  LE+ F++++ ++  +K++la+eL+l+prq++vWFqnrRARtk+kq+E+++e+ k+ +++l++en rL+ke eeLr +
  Lj6g3v1300850.1  85 RKKLRLTKAQSFRLEDAFKMNDSINAAQKQALAEELNLKPRQIEVWFQNRRARTKLKQTEVNCEFFKKIHEKLTNENLRLKKELEELR-A 173
                      69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-1767139IPR009057Homeodomain-like
SuperFamilySSF466892.82E-1874142IPR009057Homeodomain-like
PROSITE profilePS5007117.02281141IPR001356Homeobox domain
SMARTSM003892.9E-1583145IPR001356Homeobox domain
PfamPF000462.2E-1585139IPR001356Homeobox domain
CDDcd000861.81E-1485142No hitNo description
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
SMARTSM003405.6E-16141184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEGDDEACNK GLSLELRLGA YESKDQEKQK VEKPVAAAGL DLSFDDDHDQ DHHDDDEGKG  60
LFLKRGNEEH HHPNEESPDN TNDSRKKLRL TKAQSFRLED AFKMNDSINA AQKQALAEEL  120
NLKPRQIEVW FQNRRARTKL KQTEVNCEFF KKIHEKLTNE NLRLKKELEE LRALKVGAPP  180
LHSSHLSKAS EIHSFCPSCR SLFIRKPNEG NNNAAISNVV PNSCCKLQMK RV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18389SRKKLRL
2133141RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1300850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587005.19e-64homeobox-leucine zipper protein HAT22
RefseqXP_028180487.19e-64homeobox-leucine zipper protein HAT22-like
SwissprotP466044e-40HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A371H9814e-63A0A371H981_MUCPR; Homeobox-leucine zipper protein HOX19
STRINGGLYMA09G07051.13e-63(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-29HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]