PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1689520.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 89aa    MW: 10118.9 Da    PI: 8.9076
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1689520.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26074.61.9e-231460147
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47
                     +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasnv k+l+
  Lj6g3v1689520.1 14 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHRVFGASNVNKMLQ 60
                     7********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.681389IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-221461IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MKEGSGRKQG AAPPCAACKL LRRRCAQDCV FAPYFPADEP QKFANVHRVF GASNVNKMLQ  60
VIYFLLSFIL PNCPYTHYPT CRIWVTFDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-211062759LOB family transfactor Ramosa2.1
5ly0_B1e-211062759LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1689520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0907162e-62BT090716.1 Soybean clone JCVI-FLGm-5M9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535054.13e-35LOB domain-containing protein 4
RefseqXP_003547318.12e-35LOB domain-containing protein 4
RefseqXP_014518102.12e-35LOB domain-containing protein 4
RefseqXP_017435904.12e-35PREDICTED: LOB domain-containing protein 4-like
RefseqXP_028180280.13e-35LOB domain-containing protein 4-like
RefseqXP_028203361.12e-35LOB domain-containing protein 4-like
SwissprotQ9SHE93e-33LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0B2QS876e-34A0A0B2QS87_GLYSO; LOB domain-containing protein 4
TrEMBLA0A0L9VDQ55e-34A0A0L9VDQ5_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VIR35e-34A0A1S3VIR3_VIGRR; LOB domain-containing protein 4
TrEMBLA0A445GSR26e-34A0A445GSR2_GLYSO; LOB domain-containing protein 4
TrEMBLI1L0C86e-34I1L0C8_SOYBN; Uncharacterized protein
TrEMBLI1MG136e-34I1MG13_SOYBN; Uncharacterized protein
STRINGGLYMA09G02510.11e-34(Glycine max)
STRINGGLYMA15G13410.11e-34(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-35LOB domain-containing protein 4